The worst affected area was in Sumenep district, East Java, where three people died in one village and several homes were damaged.
A 7.5-magnitude quake on September 28 triggered a tsunami and extensive soil liquefaction, a phenomenon that turns soft soil into a seething mire, killing 2,073 people, according to the latest official estimate.
A total 2,073 bodies had been recovered since the twin disasters, authorities said Thursday.
The tremor comes after a 7.5-magnitude quake and subsequent tsunami struck off the Indonesian island of Sulawesi - around 1,000 kilometres northeast of Situbondo - last month, killing more than 2,000 people.
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The 6.0-magnitude natural disaster struck off the coast of Indonesia's Bali and Java islands in the early hours, jolting residents awake and sending them rushing into the streets.
Indonesia is still reeling after the natural disaster and ensuing tsunami that struck the island in late September.
As hope of finding more survivors diminish by the day, Indonesia's National Mitigation Disaster Agency spokesman Sutopo Purwo Nugroho said many more people could be buried, especially in Palu neighborhoods, where more than 3,000 homes were damaged or sucked into deep mud when the quake caused loose soil to liquefy.
He said the focus now shifts to the reconstruction phase, which could take years.
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"The natural disaster happened early Thursday when they were sleeping and the quake suddenly rocked so they didn't have time to evacuate", he said, adding that damage caused by the tremor was not widespread.
Some tourists and residents on Bali went outdoors as a precaution but then back to sleep when there was no tsunami warning.
Those zones were all but destroyed by liquefaction, a phenomenon where the brute force of a quake turns soil to quicksand. "Everything I own, everyone else, is gone", he said.
They were told "all foreign USAR teams should make their way obviously back to their countries".
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Agency spokesman Sutopo Purwo Nugroho said today prayers will be held, collectively, in Balaroa, Petobo and Jono Oge to "end the evacuation of bodies". Commerce Minister Counselor Wang Liping from the Chinese Embassy in Indonesia and Legal and Cooperation Bureau Chief Meiladyastrinda Hapsari from the National Disaster Management Authority of Indonesia handled the transfer of aid items in the airport on behalf of the two governments. The agency has issued guidelines that say foreign aid workers can be in the field only with Indonesian partners.